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FAIL bioperl-1.4 i686-linux-thread-multi 2.4.27-3-686
From:
david
Date:
April 18, 2008 07:49
Subject:
FAIL bioperl-1.4 i686-linux-thread-multi 2.4.27-3-686
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
--
Dear Ewan Birney,
This is a computer-generated report for bioperl-1.4
on perl 5.10.0, created by CPAN-Reporter-1.1404.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://cpantest.grango.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /home/david/_/_/perl-5.10.0/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/AAChange...................ok
t/AAReverseMutate............ok
t/AlignIO....................ok
t/AlignStats.................ok
t/Allele.....................ok
t/Alphabet...................ok
t/Annotation.................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/AnnotationAdaptor..........ok
t/Assembly...................ok
t/Biblio.....................SOAP::Lite not installed. Skipping some tests.
ok
1/24 skipped: various reasons
t/Biblio_biofetch............ok
t/BiblioReferences...........ok
t/BioDBGFF...................ok
t/BioFetch_DB................FAILED tests 8, 20-21
Failed 3/27 tests, 88.89% okay
t/BioGraphics................GD or Text::Shellwords modules are not installed. This means that Bio::Graphics module is unusable. Skipping tests.
ok
t/BlastIndex.................ok
t/BPbl2seq...................ok
t/BPlite.....................ok
t/BPpsilite..................ok
t/Chain......................ok
t/cigarstring................ok
t/ClusterIO..................XML::Parser::PerlSAX not loaded. This means ClusterIO::dbsnp test cannot be executed. Skipping
ok
t/Coalescent.................ok
t/CodonTable.................ok
t/consed.....................ok
t/CoordinateGraph............ok
t/CoordinateMapper...........ok
t/Correlate..................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/CytoMap....................ok
t/DB.........................FAILED tests 30-31
Failed 2/78 tests, 97.44% okay (less 1 skipped test: 75 okay, 96.15%)
t/DBCUTG.....................ok
t/DBFasta....................ok
t/DNAMutation................ok
t/Domcut.....................ok
t/ECnumber...................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/ELM........................
-------------------- WARNING ---------------------
MSG: Bio::Tools::Analysis::Protein::ELM Request Error:
400 URL must be absolute
Content-Type: text/plain
Client-Date: Fri, 18 Apr 2008 14:37:42 GMT
Client-Warning: Internal response
400 URL must be absolute
---------------------------------------------------
ok
t/EMBL_DB....................FAILED tests 6, 13-14
Failed 3/15 tests, 80.00% okay
t/EMBOSS_Tools...............ok
t/EncodedSeq.................ok
t/ePCR.......................ok
t/ESEfinder..................ok
t/est2genome.................ok
t/Exception..................ok
t/Exonerate..................ok
t/flat.......................ok
t/FootPrinter................ok
t/game.......................XML::Parser::PerlSAX not loaded. This means game test cannot be executed. Skipping
ok
t/GDB........................ok
t/GeneCoordinateMapper.......
-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id (at least one sublocation does!)
---------------------------------------------------
-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id (at least one sublocation does!)
---------------------------------------------------
Use of uninitialized value in concatenation (.) or string at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Coordinate/GeneMapper.pm line 814.
ok
t/Geneid.....................ok
t/Genewise...................ok
2/51 skipped: various reasons
t/Genomewise.................ok
t/Genpred....................ok
t/GFF........................Filehandle GEN0 opened only for output at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/IO.pm line 440.
Filehandle GEN1 opened only for output at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/IO.pm line 440.
ok
t/GOR4.......................ok
t/GOterm.....................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/GuessSeqFormat.............Bio::SeqIO: game cannot be found
Exception
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module Bio::SeqIO::game. Can't locate XML/Parser/PerlSAX.pm in @INC (@INC contains: t .. /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/arch /home/david/cpantesting/perl-5.10.0/lib/5.10.0/i686-linux-thread-multi /home/david/cpantesting/perl-5.10.0/lib/5.10.0 /home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/i686-linux-thread-multi /home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO/game/gameSubs.pm line 70.
BEGIN failed--compilation aborted at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO/game/gameSubs.pm line 70.
Compilation failed in require at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO/game/gameHandler.pm line 62.
BEGIN failed--compilation aborted at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO/game/gameHandler.pm line 62.
Compilation failed in require at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO/game.pm line 76.
BEGIN failed--compilation aborted at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO/game.pm line 76.
Compilation failed in require at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Root.pm line 394.
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Root.pm:328
STACK: Bio::Root::Root::_load_module /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Root.pm:396
STACK: Bio::SeqIO::_load_format_module /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO.pm:549
STACK: Bio::SeqIO::new /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO.pm:377
STACK: t/GuessSeqFormat.t:61
-----------------------------------------------------------
For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
FAILED test 11
Failed 1/46 tests, 97.83% okay
t/hmmer......................ok
t/HNN........................ok
t/Index......................ok
t/InstanceSite...............ok
t/InterProParser.............Bio::OntologyIO: InterProParser cannot be found
Exception
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module Bio::OntologyIO::InterProParser. Can't locate XML/Parser/PerlSAX.pm in @INC (@INC contains: t .. . ./blib/lib /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/arch /home/david/cpantesting/perl-5.10.0/lib/5.10.0/i686-linux-thread-multi /home/david/cpantesting/perl-5.10.0/lib/5.10.0 /home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/i686-linux-thread-multi /home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0) at Bio/OntologyIO/InterProParser.pm line 84.
BEGIN failed--compilation aborted at Bio/OntologyIO/InterProParser.pm line 84.
Compilation failed in require at Bio/Root/Root.pm line 394.
STACK: Error::throw
STACK: Bio::Root::Root::throw Bio/Root/Root.pm:328
STACK: Bio::Root::Root::_load_module Bio/Root/Root.pm:396
STACK: Bio::OntologyIO::_load_format_module Bio/OntologyIO.pm:255
STACK: Bio::OntologyIO::new Bio/OntologyIO.pm:165
STACK: t/InterProParser.t:52
-----------------------------------------------------------
For more information about the OntologyIO system please see the docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_ontology" on an undefined value at t/InterProParser.t line 59.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED test 2
Failed 1/47 tests, 97.87% okay
t/IUPAC......................ok
t/largefasta.................ok
t/largepseq..................ok
t/LinkageMap.................ok
t/LiveSeq....................ok
t/LocatableSeq...............ok
t/Location...................ok
t/LocationFactory............ok
t/LocusLink..................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/lucy.......................ok
t/Map........................ok
t/MapIO......................ok
t/Matrix.....................ok
t/Measure....................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/MeSH.......................ok
t/MetaSeq....................ok
t/MicrosatelliteMarker.......ok
t/MiniMIMentry...............Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/MitoProt...................ok
t/Molphy.....................ok
t/multiple_fasta.............ok
t/Mutation...................ok
t/Mutator....................ok
t/NetPhos....................FAILED tests 10, 13
Failed 2/14 tests, 85.71% okay
t/Node.......................ok
t/OddCodes...................ok
t/OMIMentry..................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/OMIMentryAllelicVariant....Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/OMIMparser.................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/Ontology...................
Graph.pm doesn't seem to be installed on this system -- the GO Parser needs it...
ok
t/OntologyEngine.............Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/PAML.......................ok
t/Perl.......................Use of uninitialized value $au in substitution (s///) at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO/swiss.pm line 855, <STREAM> line 43.
ok
t/phd........................ok
t/Phenotype..................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/PhylipDist.................ok
t/pICalculator...............ok
t/Pictogram..................SVG not installed, skipping tests at t/Pictogram.t line 29.
ok
t/PopGen.....................ok
t/PopGenSims.................ok
t/primaryqual................ok
t/PrimarySeq.................ok
t/primedseq..................ok
t/Primer.....................ok
t/primer3....................ok
t/Promoterwise...............ok
t/ProtDist...................ok
t/psm........................ok
t/QRNA.......................ok
t/qual.......................ok
t/RandDistFunctions..........ok
t/RandomTreeFactory..........ok
t/Range......................ok
t/RangeI.....................ok
t/RefSeq.....................ok
t/Registry...................DB_File and BerkeleyDB not found. Skipping DB_File tests
ok
t/Relationship...............Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/RelationshipType...........Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/RemoteBlast................ok
4/6 skipped: various reasons
t/RepeatMasker...............ok
t/RestrictionAnalysis........ok
t/RestrictionEnzyme..........ok
t/RestrictionIO..............ok
t/RNAChange..................ok
t/RootI......................ok
t/RootIO.....................ok
t/RootStorable...............ok
t/Scansite...................ok
t/scf........................ok
t/SearchDist.................ok
t/SearchIO...................XML::Parser::PerlSAX or HTML::Entities not loaded. This means SearchIO::blastxml test cannot be executed. Skipping
ok
t/Seq........................ok
t/SeqAnalysisParser..........ok
t/SeqBuilder.................ok
t/SeqDiff....................ok
t/SeqFeatCollection..........ok
t/SeqFeature.................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/seqfeaturePrimer...........ok
t/SeqIO......................ok
3/235 skipped: various reasons
t/SeqPattern.................ok
t/SeqStats...................ok
t/SequenceFamily.............ok
t/sequencetrace..............ok
t/SeqUtils...................ok
t/seqwithquality.............ok
t/SeqWords...................ok
t/Sigcleave..................ok
t/Sim4.......................ok
t/SimilarityPair.............ok
t/SimpleAlign................ok
t/simpleGOparser.............
Graph.pm doesn't seem to be installed on this system -- the GO Parser needs it...
ok
t/sirna......................ok
t/SiteMatrix.................ok
t/SNP........................ok
t/Sopma......................ok
t/Species....................ok
t/splicedseq.................ok
t/StandAloneBlast............ok
t/StructIO...................ok
t/Structure..................ok
t/Swiss......................ok
t/Symbol.....................ok
t/Taxonomy...................ok
t/Tempfile...................ok
t/Term.......................Useless localization of scalar assignment at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Object.pm line 699.
ok
t/Tools......................ok
t/Tree.......................ok
t/TreeIO.....................ok
t/trim.......................ok
t/tutorial...................Use of uninitialized value $au in substitution (s///) at Bio/SeqIO/swiss.pm line 855, <STREAM> line 43.
Bio::SeqIO: game cannot be found
Exception
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module Bio::SeqIO::game. Can't locate XML/Parser/PerlSAX.pm in @INC (@INC contains: . t /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/arch /home/david/cpantesting/perl-5.10.0/lib/5.10.0/i686-linux-thread-multi /home/david/cpantesting/perl-5.10.0/lib/5.10.0 /home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/i686-linux-thread-multi /home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0) at Bio/SeqIO/game/gameSubs.pm line 70.
BEGIN failed--compilation aborted at Bio/SeqIO/game/gameSubs.pm line 70.
Compilation failed in require at Bio/SeqIO/game/gameHandler.pm line 62.
BEGIN failed--compilation aborted at Bio/SeqIO/game/gameHandler.pm line 62.
Compilation failed in require at Bio/SeqIO/game.pm line 76.
BEGIN failed--compilation aborted at Bio/SeqIO/game.pm line 76.
Compilation failed in require at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Root.pm line 394.
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Root.pm:328
STACK: Bio::Root::Root::_load_module /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/Root/Root.pm:396
STACK: Bio::SeqIO::_load_format_module /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO.pm:549
STACK: Bio::SeqIO::new /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/Bio/SeqIO.pm:377
STACK: main::run_examples /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/bptutorial.pl:4027
STACK: t/tutorial.t:23
-----------------------------------------------------------
For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_seq" on an undefined value at /home/david/_/_/perl-5.10.0/.cpan/build/bioperl-1.4-kIz544/blib/lib/bptutorial.pl line 4035.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 19-21
Failed 3/21 tests, 85.71% okay
t/UCSCParsers................ok
t/Unflattener................ok
t/Unflattener2...............ok
t/UniGene....................ok
t/Variation_IO...............
The XML-format conversion requires the CPAN modules XML::Twig, XML::Writer, and IO::String to be installed on your system, which they probably aren't. Skipping these tests.
ok
t/WABA.......................ok
t/XEMBL_DB...................SOAP::Lite and/or XML::DOM not installed. This means that Bio::DB::XEMBL module is not usable. Skipping tests.
ok
Failed Test Stat Wstat Total Fail List of Failed
-------------------------------------------------------------------------------
t/BioFetch_DB.t 27 3 8 20-21
t/DB.t 78 2 30-31
t/EMBL_DB.t 15 3 6 13-14
t/GuessSeqFormat.t 46 1 11
t/InterProParser.t 2 512 47 1 2
t/NetPhos.t 14 2 10 13
t/tutorial.t 2 512 21 6 19-21
11 subtests skipped.
Failed 7/179 test scripts. 15/8122 subtests failed.
Files=179, Tests=8122, 677 wallclock secs (71.77 cusr + 6.99 csys = 78.76 CPU)
Failed 7/179 test programs. 15/8122 subtests failed.
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
-------------- ---- -------
DB_File 0 1.816_1
File::Spec 0 3.2501
File::Temp 0 0.18
HTML::Entities 0 1.35
IO::Scalar 0 2.110
IO::String 0 1.08
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB
LANGUAGE = en_GB:en_US:en_GB:en
PATH = /usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games
PERL5LIB =
PERL5_CPANPLUS_IS_RUNNING = 16206
PERL5_CPAN_IS_RUNNING = 16206
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/david/_/_/perl-5.10.0/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 1000 20 24 25 29 44 46
$EGID = 1000 1000 20 24 25 29 44 46
Perl module toolchain versions installed:
Module Have
------------------- ---------
CPAN 1.9205
Cwd 3.2501
ExtUtils::CBuilder 0.21
ExtUtils::Command 1.13
ExtUtils::Install 1.44
ExtUtils::MakeMaker 6.42
ExtUtils::Manifest 1.51_01
ExtUtils::ParseXS 2.18_02
File::Spec 3.2501
Module::Build 0.2808_01
Module::Signature n/a
Test::Harness 2.64
Test::More 0.80
YAML 0.66
YAML::Syck n/a
version 0.74
--
Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
Platform:
osname=linux, osvers=2.4.27-3-686, archname=i686-linux-thread-multi
uname='linux pigsty 2.4.27-3-686 #1 tue dec 5 21:03:54 utc 2006 i686 gnulinux '
config_args='-de -Dprefix=/home/david/cpantesting/perl-5.10.0 -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.1.2 20061115 (prerelease) (Debian 4.1.1-21)', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=/lib/libc-2.3.6.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.3.6'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'
-
FAIL bioperl-1.4 i686-linux-thread-multi 2.4.27-3-686
by david