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Postings from April 2008
FAIL bioperl-run-1.4 sun4-solaris-thread-multi 2.9
From:
david
Date:
April 21, 2008 13:21
Subject:
FAIL bioperl-run-1.4 sun4-solaris-thread-multi 2.9
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
--
Dear Ewan Birney,
This is a computer-generated report for bioperl-run-1.4
on perl 5.10.0, created by CPAN-Reporter-1.1404.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://cpantest.grango.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/local/bin/make test':
PERL_DL_NONLAZY=1 /usr/local/home/david/cpantesting/perl-5.10.0/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/Analysis_soap...........SOAP::Lite not installed. Skipping some tests.
ok
16/17 skipped: various reasons
t/AnalysisFactory_soap....SOAP::Lite not installed. Skipping some tests.
ok
7/8 skipped: various reasons
t/Blat....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 60.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 60.
Compilation failed in require at t/Blat.t line 24.
BEGIN failed--compilation aborted at t/Blat.t line 24.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-11
Failed 11/11 tests, 0.00% okay
t/Clustalw................Can't locate Bio/Seq.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm line 321.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm line 321.
Compilation failed in require at t/Clustalw.t line 17.
BEGIN failed--compilation aborted at t/Clustalw.t line 17.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-9
Failed 9/9 tests, 0.00% okay
t/Coil....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Coil.pm line 69.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Coil.pm line 69.
Compilation failed in require at t/Coil.t line 22.
BEGIN failed--compilation aborted at t/Coil.t line 22.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Consense................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm line 183.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm line 183.
Compilation failed in require at t/Consense.t line 27.
BEGIN failed--compilation aborted at t/Consense.t line 27.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-7
Failed 7/7 tests, 0.00% okay
t/DBA.....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 81.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 81.
Compilation failed in require at t/DBA.t line 16.
BEGIN failed--compilation aborted at t/DBA.t line 16.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-15
Failed 15/15 tests, 0.00% okay
t/DrawGram................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
Compilation failed in require at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 76.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 76.
Compilation failed in require at t/DrawGram.t line 20.
BEGIN failed--compilation aborted at t/DrawGram.t line 20.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-4
Failed 4/4 tests, 0.00% okay
t/DrawTree................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
Compilation failed in require at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 76.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 76.
Compilation failed in require at t/DrawTree.t line 20.
BEGIN failed--compilation aborted at t/DrawTree.t line 20.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-4
Failed 4/4 tests, 0.00% okay
t/EMBOSS..................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Factory/EMBOSS.pm line 102.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Factory/EMBOSS.pm line 102.
Compilation failed in require at t/EMBOSS.t line 23.
BEGIN failed--compilation aborted at t/EMBOSS.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-30
Failed 30/30 tests, 0.00% okay
t/Eponine.................Can't locate Bio/Tools/Eponine.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Eponine.pm line 91.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Eponine.pm line 91.
Compilation failed in require at t/Eponine.t line 25.
BEGIN failed--compilation aborted at t/Eponine.t line 25.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/FootPrinter.............Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/FootPrinter.pm line 164.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/FootPrinter.pm line 164.
Compilation failed in require at t/FootPrinter.t line 16.
BEGIN failed--compilation aborted at t/FootPrinter.t line 16.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-18
Failed 18/18 tests, 0.00% okay
t/Genewise................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Genewise.pm line 92.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Genewise.pm line 92.
Compilation failed in require at t/Genewise.t line 16.
BEGIN failed--compilation aborted at t/Genewise.t line 16.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-13
Failed 13/13 tests, 0.00% okay
t/Genscan.................Can't locate Bio/Seq.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Genscan.pm line 66.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Genscan.pm line 66.
Compilation failed in require at t/Genscan.t line 23.
BEGIN failed--compilation aborted at t/Genscan.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Hmmer...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Hmmer.pm line 91.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Hmmer.pm line 91.
Compilation failed in require at t/Hmmer.t line 24.
BEGIN failed--compilation aborted at t/Hmmer.t line 24.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Hmmpfam.................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Hmmpfam.pm line 85.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Hmmpfam.pm line 85.
Compilation failed in require at t/Hmmpfam.t line 23.
BEGIN failed--compilation aborted at t/Hmmpfam.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Lagan...................Can't locate Bio/AlignIO.pm in @INC (@INC contains: /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 . /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at t/Lagan.t line 6.
BEGIN failed--compilation aborted at t/Lagan.t line 6.
dubious
Test returned status 2 (wstat 512, 0x200)
t/Mdust...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Mdust.pm line 87.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Mdust.pm line 87.
Compilation failed in require at t/Mdust.t line 17.
BEGIN failed--compilation aborted at t/Mdust.t line 17.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-2
Failed 2/2 tests, 0.00% okay
t/Molphy..................Can't locate Bio/Tools/Phylo/Molphy.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at t/Molphy.t line 46.
BEGIN failed--compilation aborted at t/Molphy.t line 46.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-7
Failed 7/7 tests, 0.00% okay
t/Neighbor................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
Compilation failed in require at t/Neighbor.t line 19.
BEGIN failed--compilation aborted at t/Neighbor.t line 19.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-14
Failed 14/14 tests, 0.00% okay
t/PAML....................Can't locate Bio/Tools/Phylo/PAML.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at t/PAML.t line 54.
BEGIN failed--compilation aborted at t/PAML.t line 54.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Pise....................Need XML::Parser::PerlSA to run test, skipping test
ok
10/10 skipped: various reasons
t/Primate.................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Primate.pm line 73.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Primate.pm line 73.
Compilation failed in require at t/Primate.t line 43.
BEGIN failed--compilation aborted at t/Primate.t line 43.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Primer3.................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t .. /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Primer3.pm line 132.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Primer3.pm line 132.
Compilation failed in require at t/Primer3.t line 27.
BEGIN failed--compilation aborted at t/Primer3.t line 27.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Prints..................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Prints.pm line 63.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Prints.pm line 63.
Compilation failed in require at t/Prints.t line 23.
BEGIN failed--compilation aborted at t/Prints.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Profile.................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Profile.pm line 65.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Profile.pm line 65.
Compilation failed in require at t/Profile.t line 23.
BEGIN failed--compilation aborted at t/Profile.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Promoterwise............Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Promoterwise.pm line 87.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Promoterwise.pm line 87.
Compilation failed in require at t/Promoterwise.t line 16.
BEGIN failed--compilation aborted at t/Promoterwise.t line 16.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-8
Failed 8/8 tests, 0.00% okay
t/ProtDist................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
Compilation failed in require at t/ProtDist.t line 20.
BEGIN failed--compilation aborted at t/ProtDist.t line 20.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-11
Failed 11/11 tests, 0.00% okay
t/ProtPars................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 130.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 130.
Compilation failed in require at t/ProtPars.t line 20.
BEGIN failed--compilation aborted at t/ProtPars.t line 20.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-7
Failed 7/7 tests, 0.00% okay
t/Pseudowise..............Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Pseudowise.pm line 67.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Pseudowise.pm line 67.
Compilation failed in require at t/Pseudowise.t line 23.
BEGIN failed--compilation aborted at t/Pseudowise.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/RepeatMasker............Can't locate Bio/SeqFeature/Generic.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 85.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 85.
Compilation failed in require at t/RepeatMasker.t line 16.
BEGIN failed--compilation aborted at t/RepeatMasker.t line 16.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-8
Failed 8/8 tests, 0.00% okay
t/Seg.....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Seg.pm line 65.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Seg.pm line 65.
Compilation failed in require at t/Seg.t line 23.
BEGIN failed--compilation aborted at t/Seg.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/SeqBoot.................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 156.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 156.
Compilation failed in require at t/SeqBoot.t line 20.
BEGIN failed--compilation aborted at t/SeqBoot.t line 20.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-6
Failed 6/6 tests, 0.00% okay
t/Signalp.................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Signalp.pm line 66.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Signalp.pm line 66.
Compilation failed in require at t/Signalp.t line 23.
BEGIN failed--compilation aborted at t/Signalp.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/Sim4....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/Sim4.pm line 89.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/Sim4.pm line 89.
Compilation failed in require at t/Sim4.t line 16.
BEGIN failed--compilation aborted at t/Sim4.t line 16.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-20
Failed 20/20 tests, 0.00% okay
t/StandAloneFasta.........Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm line 116.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm line 116.
Compilation failed in require at t/StandAloneFasta.t line 24.
BEGIN failed--compilation aborted at t/StandAloneFasta.t line 24.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/TCoffee.................Can't locate Bio/Seq.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm line 500.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm line 500.
Compilation failed in require at t/TCoffee.t line 20.
BEGIN failed--compilation aborted at t/TCoffee.t line 20.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-22
Failed 22/22 tests, 0.00% okay
t/Tmhmm...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Tmhmm.pm line 69.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Tmhmm.pm line 69.
Compilation failed in require at t/Tmhmm.t line 23.
BEGIN failed--compilation aborted at t/Tmhmm.t line 23.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
t/TribeMCL................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/TribeMCL.pm line 153.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/TribeMCL.pm line 153.
Compilation failed in require at t/TribeMCL.t line 17.
BEGIN failed--compilation aborted at t/TribeMCL.t line 17.
dubious
Test returned status 2 (wstat 512, 0x200)
DIED. FAILED tests 1-22
Failed 22/22 tests, 0.00% okay
t/Vista...................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Vista.pm line 125.
BEGIN failed--compilation aborted at /disk2/david/perl-5.10.0/.cpan/build/bioperl-run-1.4-fLt1XC/blib/lib/Bio/Tools/Run/Vista.pm line 125.
Compilation failed in require at t/Vista.t line 26.
BEGIN failed--compilation aborted at t/Vista.t line 26.
dubious
Test returned status 2 (wstat 512, 0x200)
after all the subtests completed successfully
Failed Test Stat Wstat Total Fail List of Failed
-------------------------------------------------------------------------------
t/Blat.t 2 512 11 22 1-11
t/Clustalw.t 2 512 9 18 1-9
t/Coil.t 2 512 4 0 ??
t/Consense.t 2 512 7 14 1-7
t/DBA.t 2 512 15 30 1-15
t/DrawGram.t 2 512 4 8 1-4
t/DrawTree.t 2 512 4 8 1-4
t/EMBOSS.t 2 512 30 60 1-30
t/Eponine.t 2 512 5 0 ??
t/FootPrinter.t 2 512 18 36 1-18
t/Genewise.t 2 512 13 26 1-13
t/Genscan.t 2 512 4 0 ??
t/Hmmer.t 2 512 17 0 ??
t/Hmmpfam.t 2 512 8 0 ??
t/Lagan.t 2 512 ?? ?? ??
t/Mdust.t 2 512 2 4 1-2
t/Molphy.t 2 512 7 14 1-7
t/Neighbor.t 2 512 14 28 1-14
t/PAML.t 2 512 17 0 ??
t/Primate.t 2 512 6 0 ??
t/Primer3.t 2 512 7 0 ??
t/Prints.t 2 512 5 0 ??
t/Profile.t 2 512 5 0 ??
t/Promoterwise.t 2 512 8 16 1-8
t/ProtDist.t 2 512 11 22 1-11
t/ProtPars.t 2 512 7 14 1-7
t/Pseudowise.t 2 512 13 0 ??
t/RepeatMasker.t 2 512 8 16 1-8
t/Seg.t 2 512 6 0 ??
t/SeqBoot.t 2 512 6 12 1-6
t/Signalp.t 2 512 5 0 ??
t/Sim4.t 2 512 20 40 1-20
t/StandAloneFasta.t 2 512 15 0 ??
t/TCoffee.t 2 512 22 44 1-22
t/Tmhmm.t 2 512 5 0 ??
t/TribeMCL.t 2 512 22 44 1-22
t/Vista.t 2 512 5 0 ??
150 subtests skipped.
Failed 37/40 test scripts. 238/400 subtests failed.
Files=40, Tests=400, 7 wallclock secs ( 4.31 cusr + 1.20 csys = 5.51 CPU)
Failed 37/40 test programs. 238/400 subtests failed.
make: *** [test_dynamic] Error 2
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
No requirements found
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LD_LIBRARY_PATH = /usr/local/lib:/usr/lib:/usr/openwin/lib:/usr/ucblib:.
PATH = /usr/local/bin:/usr/bin:/sbin:/usr/sbin:/usr/openwin/bin:/usr/ccs/bin:/usr/ucb:/etc:.
PERL5LIB =
PERL5_CPANPLUS_IS_RUNNING = 21676
PERL5_CPAN_IS_RUNNING = 21676
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/local/home/david/cpantesting/perl-5.10.0/bin/perl
$UID/$EUID = 10217 / 10217
$GID = 1 1
$EGID = 1 1
Perl module toolchain versions installed:
Module Have
------------------- ---------
CPAN 1.9205
Cwd 3.2701
ExtUtils::CBuilder 0.21
ExtUtils::Command 1.13
ExtUtils::Install 1.44
ExtUtils::MakeMaker 6.42
ExtUtils::Manifest 1.51_01
ExtUtils::ParseXS 2.18_02
File::Spec 3.2701
Module::Build 0.2808_01
Module::Signature n/a
Test::Harness 2.64
Test::More 0.80
YAML 0.66
YAML::Syck n/a
version 0.74
--
Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
Platform:
osname=solaris, osvers=2.9, archname=sun4-solaris-thread-multi
uname='sunos ohno.mrbill.net 5.9 generic_122300-03 sun4u sparc sunw,ultra-80 solaris '
config_args='-de -Dprefix=/usr/local/home/david/cpantesting/perl-5.10.0 -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O',
cppflags='-D_REENTRANT -fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.2.1', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=4321
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib '
libpth=/usr/local/lib /usr/lib /usr/ccs/lib
libs=-lsocket -lnsl -lgdbm -ldb -ldl -lm -lpthread -lc
perllibs=-lsocket -lnsl -ldl -lm -lpthread -lc
libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-fPIC', lddlflags='-G -L/usr/local/lib'
-
FAIL bioperl-run-1.4 sun4-solaris-thread-multi 2.9
by david