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FAIL Bio-NEXUS-0.69b darwin-thread-multi-64int-2level 8.10.0
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From:
chris
Date:
April 23, 2008 21:57
Subject:
FAIL Bio-NEXUS-0.69b darwin-thread-multi-64int-2level 8.10.0
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.
--
Dear TJHLADISH,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.84. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
[MSG] [Thu Apr 24 05:56:19 2008] Trying to get 'http://www.cpan.org/authors/id/T/TJ/TJHLADISH/CHECKSUMS'
[MSG] [Thu Apr 24 05:56:20 2008] Checksum matches for 'Bio-NEXUS-0.69b.tar.gz'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Omland-Ravens.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_assumptions-block_options_02.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-dos.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-quoted2.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/really-long-names.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_02.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/char-matrix-spaces.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/characters-block-interleave.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-scientific.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/KOG0003.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family4nl.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/FaresWolfeCCT.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/UnaSmithHIV-both.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_01.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_format_01.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder-uneven.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_assumptions-block_options_01.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/quoted-strings1.nex'
[MSG] [Thu Apr 24 05:56:22 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family9iw.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_notes-text.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Bird_Ovomucoids.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-cladogram.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Human_mt_DNA.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_private-commands.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/temp.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_upper_nodiag.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-liverwort-rbcl.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/01_taxa-labels-squarebrackets.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-state-frequency.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/history-block_probab-distrib.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic-uncertain.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-ladder.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-uncertain.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-partial.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-extended-root-branch.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_equals_methods.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_01.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family6iw.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees_branch-support-values.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-trees.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-unix.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Primate_mtDNA.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/data-block_clustalw.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-rake-cladogram.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/01_basic.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_lower_nodiag.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family1nlw.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/long-names.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_03.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic-doublequotes.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/quoted-strings2.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_02.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/barns-combined.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_rect.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-rake.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_04.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-quoted1.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-multiple.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_upper.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_format_02.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family7n.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_block_level_methods.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/intrablock-comment.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Kingdoms_DNA.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-rake.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_upper_no-diag.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_03.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-mac.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/tree-nhx.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/simple_taxa_and_chars.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_upper.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder-cladogram.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-uneven.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family2alw.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/unaligned_simple_01.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family5alw.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/char-interleave.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_lower.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/radical-whitespace.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-quoted-string-name2.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_05.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_object-file-equality_01.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-translate.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family10i.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_wtset-scores.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_lower.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Omland-Orioles.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family3il.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-zero.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/multiline-intrablock-comment.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_object-file-equality_02.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-basal-trifurcation.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_rect_nodiag.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_initial.nex'
[MSG] [Thu Apr 24 05:56:23 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_04.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-horsetails-dna.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-chlamy-dna.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family8a.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/top-level-comment.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-multiple-challenges.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-negative.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_05.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-quoted-string-name1.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-horsetails-classic.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Marsupial_Wolf.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_lower_no-diag.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_todo.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels-squarebrackets.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_wrong_format.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_datablock_clustalw.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/block_link-and-title.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/assumptionsblock_options.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_shared-commands.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_ntax-nchar-dimensions.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_excessive_whitespace.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/tree_methods-02.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/notesblock_methods.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/treesblock_methods.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_charactersblock-interleave.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_podcoverage.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/tree_parsing.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_object-file-equality.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/tree_methods-01.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_module-loading.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_polymorphic-and-uncertain.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/tree_support-values.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/charactersblock_methods-02.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/assumptionsblock_wtset-scores.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_equals_methods.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_clone_methods.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/nhxcmd_parsing.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_block-level-commands.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_add-otu-clone.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_character-state-frequency.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/charactersblock_methods-01.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels-quoted.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_write.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/tree_equals.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_perlpod.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_historyblock-probab-distrib.t'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/UserManual.pod'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/changes.txt'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/buglist.txt'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/ToDo.txt'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/NEXUS_coverage.html'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/example1.nex'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/Installation.pod'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/doc/Tutorial.pod'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/nexplot.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/history.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/nexfix.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/readin_tcoffee.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/nexus-convert.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/.perltidyrc'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/bugs.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/newtonex.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/nex2text_tree.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/bugs.cmd.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/p3treeplot.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/nexdump.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/setmaker.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/tree2nex.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/align2nex.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/nexdiff.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/jags.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/roundtrip.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/pppplot.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/tree_equality.pl'
[MSG] [Thu Apr 24 05:56:24 2008] Extracted 'Bio-NEXUS-0.69/exec/nextool.pl'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/SpanBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/.perltidyrc'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/NotesBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Tree.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/HistoryBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/UnknownBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/DataBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/CharactersBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxUnitSet.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Node.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/Logger.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/Exceptions.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/NHXCmd.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/DistancesBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxaBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/CodonsBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Matrix.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/SetsBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Functions.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TreesBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/AssumptionsBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Block.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxUnit.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/UnalignedBlock.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/WeightSet.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/.perltidyrc'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS.pm'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/data/'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/data/color-my-taxsets.nex'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.ps'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.pdf'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/data/Liang_et_al_Figure.nex'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.nex'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/data/basic.nex'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/README'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/META.yml'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/Makefile.PL'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/MANIFEST'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/Build.PL'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/LICENSE'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio-NEXUS-0.69/README_admin'
[MSG] [Thu Apr 24 05:56:25 2008] Extracted 'Bio::NEXUS' to '/Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69'
[MSG] [Thu Apr 24 05:56:27 2008] *** You don't seem to have Clone::PP installed.
This means some functionality won't be
available (though core functionality will be).
*** You don't seem to have Test::Deep installed.
This means some functionality won't be
available (though core functionality will be).
Writing Makefile for Bio::NEXUS
[MSG] [Thu Apr 24 05:56:27 2008] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value'
[MSG] [Thu Apr 24 05:56:32 2008] cp exec/nextool.pl blib/script/nextool.pl
/Volumes/Media/smoke/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nextool.pl
cp exec/nex2text_tree.pl blib/script/nex2text_tree.pl
/Volumes/Media/smoke/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nex2text_tree.pl
cp exec/nexplot.pl blib/script/nexplot.pl
/Volumes/Media/smoke/perl588/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nexplot.pl
Manifying blib/man1/nextool.pl.1
Manifying blib/man1/nex2text_tree.pl.1
Manifying blib/man1/nexplot.pl.1
Manifying blib/man3/Bio::NEXUS::DataBlock.3
Manifying blib/man3/Bio::NEXUS::CodonsBlock.3
Manifying blib/man3/Bio::NEXUS::NotesBlock.3
Manifying blib/man3/Bio::NEXUS::NHXCmd.3
Manifying blib/man3/Bio::NEXUS::HistoryBlock.3
Manifying blib/man3/Bio::NEXUS::TaxUnit.3
Manifying blib/man3/Bio::NEXUS::CharactersBlock.3
Manifying blib/man3/Bio::NEXUS::SpanBlock.3
Manifying blib/man3/Bio::NEXUS::UnalignedBlock.3
Manifying blib/man3/Bio::NEXUS::TaxUnitSet.3
Manifying blib/man3/Bio::NEXUS::DistancesBlock.3
Manifying blib/man3/Bio::NEXUS::UnknownBlock.3
Manifying blib/man3/Bio::NEXUS::Node.3
Manifying blib/man3/Bio::NEXUS::Matrix.3
Manifying blib/man3/Bio::NEXUS::Tree.3
Manifying blib/man3/Bio::NEXUS::WeightSet.3
Manifying blib/man3/Bio::NEXUS::TreesBlock.3
Manifying blib/man3/Bio::NEXUS::Util::Exceptions.3
Manifying blib/man3/Bio::NEXUS::SetsBlock.3
Manifying blib/man3/Bio::NEXUS::TaxaBlock.3
Manifying blib/man3/Bio::NEXUS::Util::Logger.3
Manifying blib/man3/Bio::NEXUS::AssumptionsBlock.3
Manifying blib/man3/Bio::NEXUS::Block.3
Manifying blib/man3/Bio::NEXUS.3
Manifying blib/man3/Bio::NEXUS::Functions.3
[ERROR] [Thu Apr 24 05:56:54 2008] MAKE TEST failed: PERL_DL_NONLAZY=1 /Volumes/Media/smoke/perl588/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/_perl_module-loading....................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/_perl_module-loading.t line 18.
BEGIN failed--compilation aborted at t/_perl_module-loading.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/_perl_perlpod...........................skipped: Test::Pod required for testing POD
t/_perl_podcoverage.......................skipped: Test::Pod::Coverage required for testing POD coverage
t/assumptionsblock_options................ok
t/assumptionsblock_wtset-scores...........ok
t/block_link-and-title....................ok
t/charactersblock_methods-01..............ok
t/charactersblock_methods-02..............ok
t/matrix_character-state-frequency........ok
t/matrix_charactersblock-interleave.......ok
t/matrix_historyblock-probab-distrib......ok
t/matrix_polymorphic-and-uncertain........ok
t/nexus_add-otu-clone.....................skipped: Test::Deep not found
t/nexus_block-level-commands..............ok
t/nexus_taxa-labels-quoted................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels-quoted.t line 18.
BEGIN failed--compilation aborted at t/nexus_taxa-labels-quoted.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/nexus_taxa-labels-squarebrackets........Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels-squarebrackets.t line 21.
BEGIN failed--compilation aborted at t/nexus_taxa-labels-squarebrackets.t line 21.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/nexus_taxa-labels....................... Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels.t line 21.
BEGIN failed--compilation aborted at t/nexus_taxa-labels.t line 21.
# Looks like your test died before it could output anything.
t/nexus_wrong_format......................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_wrong_format.t line 20.
BEGIN failed--compilation aborted at t/nexus_wrong_format.t line 20.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/nhxcmd_parsing..........................ok
t/notesblock_methods......................skipped: The notes block implementation is not complete
t/tree_equals.............................ok
t/tree_methods-01.........................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_methods-01.t line 18.
BEGIN failed--compilation aborted at t/tree_methods-01.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/tree_methods-02.........................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_methods-02.t line 18.
BEGIN failed--compilation aborted at t/tree_methods-02.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/tree_parsing............................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_parsing.t line 19.
BEGIN failed--compilation aborted at t/tree_parsing.t line 19.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/tree_support-values..................... Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_support-values.t line 18.
BEGIN failed--compilation aborted at t/tree_support-values.t line 18.
# Looks like your test died before it could output anything.
t/treesblock_methods......................ok
t/uncat_clone_methods.....................skipped: Clone::PP not installed
t/uncat_datablock_clustalw................ok
t/uncat_equals_methods....................ok
t/uncat_excessive_whitespace..............ok
t/uncat_ntax-nchar-dimensions.............ok
t/uncat_object-file-equality..............ok
t/uncat_shared-commands...................ok
t/uncat_todo.............................. Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib /Volumes/Media/smoke/perl588/lib/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8/darwin-thread-multi-64int-2level /Volumes/Media/smoke/perl588/lib/site_perl/5.8.8 /Volumes/Media/smoke/perl588/lib/site_perl .) at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/uncat_todo.t line 19.
BEGIN failed--compilation aborted at t/uncat_todo.t line 19.
# Looks like your test died before it could output anything.
t/uncat_write.............................ok
Test Summary Report
-------------------
t/_perl_module-loading.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_taxa-labels-quoted.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_taxa-labels-squarebrackets.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_taxa-labels.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_wrong_format.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_methods-01.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_methods-02.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_parsing.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_support-values.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/uncat_ntax-nchar-dimensions.t (Wstat: 0 Tests: 4 Failed: 0)
TODO passed: 3
t/uncat_todo.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
Files=35, Tests=228, 21 wallclock secs ( 0.81 usr 0.63 sys + 16.15 cusr 2.41 csys = 20.00 CPU)
Result: FAIL
Failed 10/35 test programs. 0/228 subtests failed.
make: *** [test_dynamic] Error 255
[MSG] [Thu Apr 24 05:56:54 2008] DEFAULT 'proceed_on_test_failure' HANDLER RETURNING 'sub return value'
MISSING PREREQUISITES:
It was observed that the test suite seem to fail without these modules:
Bio::NEXUS::Util::Exceptions
As such, adding the prerequisite module(s) to 'PREREQ_PM' in your
Makefile.PL should solve this problem. For example:
WriteMakefile(
AUTHOR => 'TJHLADISH (cpanplus-info@lists.sf.net)',
... # other information
PREREQ_PM => {
'Bio::NEXUS::Util::Exceptions' => '0', # or a minimum working version
}
);
If you are interested in making a more flexible Makefile.PL that can
probe for missing dependencies and install them, ExtUtils::AutoInstall
at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be
worth a look.
Thanks! :-)
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Test::More 0.62 0
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPAN::YACSmoke 0.0307. Powered by POE::Component::CPAN::YACSmoke.
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
PATH = /bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin
PERL5LIB = :/Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/lib:/Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib/arch:/Volumes/Media/smoke/perl588/.cpanplus/5.8.8/build/Bio-NEXUS-0.69/blib
PERL5_CPANPLUS_IS_RUNNING = 20191
PERL5_CPANPLUS_IS_VERSION = 0.84
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /Volumes/Media/smoke/perl588/bin/perl
UID: $< = 502
EUID: $> = 502
GID: $( = 502 502
EGID: $) = 502 502
-------------------------------
--
Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
Platform:
osname=darwin, osvers=8.10.0, archname=darwin-thread-multi-64int-2level
uname='darwin afalglas.bingosnet.co.uk 8.10.0 darwin kernel version 8.10.0: wed may 23 16:50:59 pdt 2007; root:xnu-792.21.3~1release_ppc power macintosh powerpc '
config_args='-e -Dprefix=/Volumes/Media/smoke/perl588 -Dusethreads -Duse64bitint -Dusemalloc=n'
hint=recommended, useposix=true, d_sigaction=define
usethreads=define use5005threads=undef useithreads=define usemultiplicity=define
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=undef uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include',
optimize='-O3',
cppflags='-no-cpp-precomp -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include'
ccversion='', gccversion='4.0.1 (Apple Computer, Inc. build 5367)', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=87654321
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib
libs=-ldbm -ldl -lm -lc
perllibs=-ldl -lm -lc
libc=/usr/lib/libc.dylib, so=dylib, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -L/usr/local/lib'
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