Front page | perl.cpan.testers |
Postings from May 2008
FAIL bioperl-run-1.4 i686-linux-thread-multi-64int-ld 2.6.24-16-generic
From:
DAGOLDEN
Date:
May 28, 2008 17:45
Subject:
FAIL bioperl-run-1.4 i686-linux-thread-multi-64int-ld 2.6.24-16-generic
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
--
Dear Ewan Birney,
This is a computer-generated report for bioperl-run-1.4
on perl 5.10.0 patch 33823, created by CPAN-Reporter-1.15.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://cpantest.grango.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /home/david/perl/5.10.x-threads/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/Analysis_soap.............SOAP::Lite not installed. Skipping some tests.
ok
t/AnalysisFactory_soap......SOAP::Lite not installed. Skipping some tests.
ok
t/Blat......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 60.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 60.
Compilation failed in require at t/Blat.t line 24.
BEGIN failed--compilation aborted at t/Blat.t line 24.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 11/11 subtests
t/Clustalw..................Can't locate Bio/Seq.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm line 321.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm line 321.
Compilation failed in require at t/Clustalw.t line 17.
BEGIN failed--compilation aborted at t/Clustalw.t line 17.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 9/9 subtests
t/Coil......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Coil.pm line 69.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Coil.pm line 69.
Compilation failed in require at t/Coil.t line 22.
BEGIN failed--compilation aborted at t/Coil.t line 22.
Dubious, test returned 2 (wstat 512, 0x200)
All 4 subtests passed
(less 4 skipped subtests: 0 okay)
t/Consense..................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm line 183.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm line 183.
Compilation failed in require at t/Consense.t line 27.
BEGIN failed--compilation aborted at t/Consense.t line 27.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 7/7 subtests
t/DBA.......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 81.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 81.
Compilation failed in require at t/DBA.t line 16.
BEGIN failed--compilation aborted at t/DBA.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 15/15 subtests
t/DrawGram..................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
Compilation failed in require at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 76.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 76.
Compilation failed in require at t/DrawGram.t line 20.
BEGIN failed--compilation aborted at t/DrawGram.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 4/4 subtests
t/DrawTree..................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
Compilation failed in require at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 76.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 76.
Compilation failed in require at t/DrawTree.t line 20.
BEGIN failed--compilation aborted at t/DrawTree.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 4/4 subtests
t/EMBOSS....................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Factory/EMBOSS.pm line 102.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Factory/EMBOSS.pm line 102.
Compilation failed in require at t/EMBOSS.t line 23.
BEGIN failed--compilation aborted at t/EMBOSS.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 30/30 subtests
t/Eponine...................Can't locate Bio/Tools/Eponine.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Eponine.pm line 91.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Eponine.pm line 91.
Compilation failed in require at t/Eponine.t line 25.
BEGIN failed--compilation aborted at t/Eponine.t line 25.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
t/FootPrinter...............Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/FootPrinter.pm line 164.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/FootPrinter.pm line 164.
Compilation failed in require at t/FootPrinter.t line 16.
BEGIN failed--compilation aborted at t/FootPrinter.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 18/18 subtests
t/Genewise..................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Genewise.pm line 92.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Genewise.pm line 92.
Compilation failed in require at t/Genewise.t line 16.
BEGIN failed--compilation aborted at t/Genewise.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 13/13 subtests
t/Genscan...................Can't locate Bio/Seq.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Genscan.pm line 66.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Genscan.pm line 66.
Compilation failed in require at t/Genscan.t line 23.
BEGIN failed--compilation aborted at t/Genscan.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 4 subtests passed
(less 4 skipped subtests: 0 okay)
t/Hmmer.....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Hmmer.pm line 91.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Hmmer.pm line 91.
Compilation failed in require at t/Hmmer.t line 24.
BEGIN failed--compilation aborted at t/Hmmer.t line 24.
Dubious, test returned 2 (wstat 512, 0x200)
All 17 subtests passed
(less 17 skipped subtests: 0 okay)
t/Hmmpfam...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Hmmpfam.pm line 85.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Hmmpfam.pm line 85.
Compilation failed in require at t/Hmmpfam.t line 23.
BEGIN failed--compilation aborted at t/Hmmpfam.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 8 subtests passed
(less 8 skipped subtests: 0 okay)
t/Lagan.....................Can't locate Bio/AlignIO.pm in @INC (@INC contains: /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at t/Lagan.t line 6.
BEGIN failed--compilation aborted at t/Lagan.t line 6.
Dubious, test returned 2 (wstat 512, 0x200)
No subtests run
t/Mdust.....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Mdust.pm line 87.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Mdust.pm line 87.
Compilation failed in require at t/Mdust.t line 17.
BEGIN failed--compilation aborted at t/Mdust.t line 17.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/2 subtests
t/Molphy....................Can't locate Bio/Tools/Phylo/Molphy.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at t/Molphy.t line 46.
BEGIN failed--compilation aborted at t/Molphy.t line 46.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 7/7 subtests
t/Neighbor..................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
Compilation failed in require at t/Neighbor.t line 19.
BEGIN failed--compilation aborted at t/Neighbor.t line 19.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 14/14 subtests
t/PAML......................Can't locate Bio/Tools/Phylo/PAML.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at t/PAML.t line 54.
BEGIN failed--compilation aborted at t/PAML.t line 54.
Dubious, test returned 2 (wstat 512, 0x200)
All 17 subtests passed
(less 17 skipped subtests: 0 okay)
t/Pise......................Need XML::Parser::PerlSA to run test, skipping test
ok
t/Primate...................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Primate.pm line 73.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Primate.pm line 73.
Compilation failed in require at t/Primate.t line 43.
BEGIN failed--compilation aborted at t/Primate.t line 43.
Dubious, test returned 2 (wstat 512, 0x200)
All 6 subtests passed
(less 6 skipped subtests: 0 okay)
t/Primer3...................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t .. /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Primer3.pm line 132.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Primer3.pm line 132.
Compilation failed in require at t/Primer3.t line 27.
BEGIN failed--compilation aborted at t/Primer3.t line 27.
Dubious, test returned 2 (wstat 512, 0x200)
All 7 subtests passed
(less 7 skipped subtests: 0 okay)
t/Prints....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Prints.pm line 63.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Prints.pm line 63.
Compilation failed in require at t/Prints.t line 23.
BEGIN failed--compilation aborted at t/Prints.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
(less 5 skipped subtests: 0 okay)
t/Profile...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Profile.pm line 65.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Profile.pm line 65.
Compilation failed in require at t/Profile.t line 23.
BEGIN failed--compilation aborted at t/Profile.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
(less 5 skipped subtests: 0 okay)
t/Promoterwise..............Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Promoterwise.pm line 87.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Promoterwise.pm line 87.
Compilation failed in require at t/Promoterwise.t line 16.
BEGIN failed--compilation aborted at t/Promoterwise.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 8/8 subtests
t/ProtDist..................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
Compilation failed in require at t/ProtDist.t line 20.
BEGIN failed--compilation aborted at t/ProtDist.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 11/11 subtests
t/ProtPars..................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 130.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 130.
Compilation failed in require at t/ProtPars.t line 20.
BEGIN failed--compilation aborted at t/ProtPars.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 7/7 subtests
t/Pseudowise................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Pseudowise.pm line 67.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Pseudowise.pm line 67.
Compilation failed in require at t/Pseudowise.t line 23.
BEGIN failed--compilation aborted at t/Pseudowise.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 13 subtests passed
(less 13 skipped subtests: 0 okay)
t/RepeatMasker..............Can't locate Bio/SeqFeature/Generic.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 85.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 85.
Compilation failed in require at t/RepeatMasker.t line 16.
BEGIN failed--compilation aborted at t/RepeatMasker.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 8/8 subtests
t/Seg.......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Seg.pm line 65.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Seg.pm line 65.
Compilation failed in require at t/Seg.t line 23.
BEGIN failed--compilation aborted at t/Seg.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 6 subtests passed
(less 6 skipped subtests: 0 okay)
t/SeqBoot...................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0 .) at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 156.
BEGIN failed--compilation aborted at /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 156.
Compilation failed in require at t/SeqBoot.t line 20.
BEGIN failed--compilation aborted at t/SeqBoot.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 6/6 subtests
t/Signalp...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/lib /home/david/.cpan/build/bioperl-run-1.4-S4cxQT/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch /home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch /home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch /home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch /home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch /home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib /home/david/perl/5.10.x-threads/lib/5.10.0/i686-linux-thread-multi-64int-ld /home/david/perl/5.10.x-threads/lib/5.10.0 /home/david/perl/5.10.x-threads/lib/site_perl/5.10.0/i686-linux-thread-multi-64in
[Output truncated after 50K]
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
No requirements found
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LD_LIBRARY_PATH = /home/david/opt/subversion/lib
PATH = .:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:.:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PERL5LIB = /home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/arch:/home/david/.cpan/build/Carp-Assert-0.20-7_3FR3/blib/lib:/home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/arch:/home/david/.cpan/build/Class-MethodMaker-2.11-DUVOTk/blib/lib:/home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/arch:/home/david/.cpan/build/IO-String-1.08-Wwk6TU/blib/lib:/home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/arch:/home/david/.cpan/build/Business-BancaSella-0.13-jfsP2v/blib/lib:/home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/arch:/home/david/.cpan/build/Bio-NEXUS-Import-0.1.0-LZlrjb/blib/lib:/home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/arch:/home/david/.cpan/build/Data-JavaScript-Anon-1.01-j6GPUE/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 22511
PERL5_CPAN_IS_RUNNING = 22511
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 16834,22511
PERL_CR_SMOKER_CURRENT = Bio-Grep-0.10.3
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/david/perl/5.10.x-threads/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000
$EGID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000
Perl module toolchain versions installed:
Module Have
------------------- ---------
CPAN 1.92_62
Cwd 3.2701
ExtUtils::CBuilder 0.23
ExtUtils::Command 1.13
ExtUtils::Install 1.50_01
ExtUtils::MakeMaker 6.44
ExtUtils::Manifest 1.51_01
ExtUtils::ParseXS 2.19_01
File::Spec 3.2701
Module::Build 0.2808_01
Module::Signature n/a
Test::Harness 3.10
Test::More 0.80
YAML 0.66
YAML::Syck 1.04
version 0.74
--
Summary of my perl5 (revision 5 version 10 subversion 0 patch 33823) configuration:
Platform:
osname=linux, osvers=2.6.24-16-generic, archname=i686-linux-thread-multi-64int-ld
uname='linux griffon 2.6.24-16-generic #1 smp thu apr 10 13:23:42 utc 2008 i686 gnulinux '
config_args='-de -Uversiononly -Dusedevel -Dusemorebits -Dprefix=/home/david/perl/5.10.x-threads -Dmydomain=.hyperbolic.net -Dcf_email=dagolden@cpan.org -Dperladmin=dagolden@cpan.org -Dcc=gcc -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=undef, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.2.3 (Ubuntu 4.2.3-2ubuntu7)', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='long double', nvsize=12, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='gcc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib
libs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=/lib/libc-2.7.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.7'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'
-
FAIL bioperl-run-1.4 i686-linux-thread-multi-64int-ld 2.6.24-16-generic
by DAGOLDEN