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FAIL Bio-Das-0.20 i686-linux 2.6.24-16-generic

From:
DAGOLDEN
Date:
July 3, 2008 15:55
Subject:
FAIL Bio-Das-0.20 i686-linux 2.6.24-16-generic
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/


--
Dear Lincoln D. Stein,
    
This is a computer-generated report for Bio-Das-0.20
on perl 5.10.0, created by CPAN-Reporter-1.1556. 

Thank you for uploading your work to CPAN.  However, there was a problem
testing your distribution.

If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:

http://cpantest.grango.org/wiki/CPANAuthorNotes

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 /home/david/perl/5.10.0/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/01das....Subroutine type redefined at blib/lib/Bio/Das/Segment.pm line 138.
Use of uninitialized value $dna in length at t/01das.t line 65.
Can't call method "reference" on an undefined value at t/01das.t line 72.
 Dubious, test returned 255 (wstat 65280, 0xff00)
 Failed 20/30 subtests 

Test Summary Report
-------------------
t/01das (Wstat: 65280 Tests: 12 Failed: 2)
  Failed tests:  10-11
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 30 tests but ran 12.
Files=1, Tests=12,  1 wallclock secs ( 0.00 usr  0.00 sys +  0.12 cusr  0.10 csys =  0.22 CPU)
Result: FAIL
Failed 1/1 test programs. 2/12 subtests failed.
make: *** [test_dynamic] Error 255

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module      Need Have 
    ----------- ---- -----
    LWP         5    5.813
    XML::Parser 1    2.36 

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = en_US.UTF-8
    LD_LIBRARY_PATH = /home/david/opt/subversion/lib
    PATH = .:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:.:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
    PERL5LIB = /home/david/.cpan/build/XML-Parser-2.36-UptdQi/blib/arch:/home/david/.cpan/build/XML-Parser-2.36-UptdQi/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 4196
    PERL5_CPAN_IS_RUNNING = 4196
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 5779,4196
    PERL_CR_SMOKER_CURRENT = Bio-Das-0.20
    PERL_MM_USE_DEFAULT = 1
    SHELL = /bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /home/david/perl/5.10.0/bin/perl
    $UID/$EUID = 1000 / 1000
    $GID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000
    $EGID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000

Perl module toolchain versions installed:

    Module              Have     
    ------------------- ---------
    CPAN                1.92_63  
    Cwd                 3.2701   
    ExtUtils::CBuilder  0.23     
    ExtUtils::Command   1.13     
    ExtUtils::Install   1.45     
    ExtUtils::MakeMaker 6.44     
    ExtUtils::Manifest  1.51_01  
    ExtUtils::ParseXS   2.18_02  
    File::Spec          3.2701   
    Module::Build       0.2808_01
    Module::Signature   n/a      
    Test::Harness       3.12     
    Test::More          0.80     
    YAML                0.66     
    YAML::Syck          n/a      
    version             0.74     


--

Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
  Platform:
    osname=linux, osvers=2.6.24-16-generic, archname=i686-linux
    uname='linux griffon 2.6.24-16-generic #1 smp thu apr 10 13:23:42 utc 2008 i686 gnulinux '
    config_args='-de -Uversiononly -Dusedevel -Dprefix=/home/david/perl/5.10.0 -Dmydomain=.hyperbolic.net -Dcf_email=dagolden@cpan.org -Dperladmin=dagolden@cpan.org -Dcc=gcc'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=undef, use64bitall=undef, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2',
    cppflags='-fno-strict-aliasing -pipe -I/usr/local/include'
    ccversion='', gccversion='4.2.3 (Ubuntu 4.2.3-2ubuntu7)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='gcc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib
    libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
    libc=/lib/libc-2.7.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.7'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'



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