PASS Bio-SAGE-Comparison-1.00 i386-freebsd 6.1-release

This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/


--
Dear Scott Zuyderduyn,
    
This is a computer-generated report for Bio-SAGE-Comparison-1.00
on perl 5.10.0, created by CPAN-Reporter-1.1651. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 /usr/local/bin/perl5.10.0 "-Iblib/lib" "-Iblib/arch" test.pl
Creating new Bio::SAGE::Comparison instance...
  ...complete.
Creating a fake tag data files...
  ...complete.
Inputting fake tag files...
Getting library labels...
  LIB2
  LIB1
  ...complete.
Getting library sizes...
  LIB1 = 162
  LIB2 = 156
  ...complete.
Calculating and printing comparison...
Tag	N(x)	N(y)	reg	p
TAGAGACCAAA	0	5	1	0.0278749993471112
AAAAAAAAAAA	100	80	-1	0.217388175442555
AAACAGAGTAA	50	60	1	0.250875948497812
GATACAGATAA	10	9	-1	0.890847706860068
CCAGATAGGCC	2	2	1	0.964631036805555
  ...complete.
Tests completed successfully.

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

    No requirements found

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    PATH = /usr/local/bin:/usr/X11R6/bin:/usr/X11/bin:/usr/perl5.8.0/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/local/pilot/bin:/home/cpansand/bin/freebsd6.1:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/X386/bin:/usr/games:/home/cpansand/devel:/usr/home/e/eserte/work/srezic-misc/scripts
    PERL5LIB = /usr/local/src/CPAN/build/IO-String-1.08-YGeuy1/blib/arch:/usr/local/src/CPAN/build/IO-String-1.08-YGeuy1/blib/lib:/usr/local/src/CPAN/build/Error-0.17015-x_T8iy/blib/arch:/usr/local/src/CPAN/build/Error-0.17015-x_T8iy/blib/lib:/usr/local/src/CPAN/build/IO-stringy-2.110-7XQo10/blib/arch:/usr/local/src/CPAN/build/IO-stringy-2.110-7XQo10/blib/lib:/usr/local/src/CPAN/build/bioperl-1.2.3-8xmbCB/blib/arch:/usr/local/src/CPAN/build/bioperl-1.2.3-8xmbCB/blib/lib:/usr/local/src/CPAN/build/Carp-Assert-0.20-jE5KeN/blib/arch:/usr/local/src/CPAN/build/Carp-Assert-0.20-jE5KeN/blib/lib:/usr/local/src/CPAN/build/Class-Base-0.03-ePhhcs/blib/arch:/usr/local/src/CPAN/build/Class-Base-0.03-ePhhcs/blib/lib:/usr/local/src/CPAN/build/Astro-FITS-Header-3.0-jrCMZn/blib/arch:/usr/local/src/CPAN/build/Astro-FITS-Header-3.0-jrCMZn/blib/lib:/usr/local/src/CPAN/build/ExtUtils-F77-1.16-8tZoy1/blib/arch:/usr/local/src/CPAN/build/ExtUtils-F77-1.16-8tZoy1/blib/lib:/usr/local/src/CPAN/build/Math-Symbolic-0.510-2jNc_z/blib/arch:/usr/local/src/CPAN/build/Math-Symbolic-0.510-2jNc_z/blib/lib:/usr/local/src/CPAN/build/Biblio-Thesaurus-0.31-2APCll/blib/arch:/usr/local/src/CPAN/build/Biblio-Thesaurus-0.31-2APCll/blib/lib:/usr/local/src/CPAN/build/Biblio-ILL-ISO-0.06-mqi6Lt/blib/arch:/usr/local/src/CPAN/build/Biblio-ILL-ISO-0.06-mqi6Lt/blib/lib:/usr/local/src/CPAN/build/Convert-ASN1-0.21-429NEE/blib/arch:/usr/local/src/CPAN/build/Convert-ASN1-0.21-429NEE/blib/lib:/usr/local/src/CPAN/build/Biblio-Citation-Parser-1.10-0ieszY/blib/arch:/usr/local/src/CPAN/build/Biblio-Citation-Parser-1.10-0ieszY/blib/lib:/usr/local/src/CPAN/build/Text-Unidecode-0.04-FtmiGT/blib/arch:/usr/local/src/CPAN/build/Text-Unidecode-0.04-FtmiGT/blib/lib:/usr/local/src/CPAN/build/GDGraph-1.44-SNyLvY/blib/arch:/usr/local/src/CPAN/build/GDGraph-1.44-SNyLvY/blib/lib:/usr/local/src/CPAN/build/GDTextUtil-0.86-_MZ5Vr/blib/arch:/usr/local/src/CPAN/build/GDTextUtil-0.86-_MZ5Vr/blib/lib:/usr/local/src/CPAN/build/XML-Quote-1.02-3Xco_S/blib/arch:/usr/local/src/CPAN/build/!
 XML-Quot
e-1.02-3Xco_S/blib/lib:/usr/local/src/CPAN/build/Benchmark-Forking-0.99-AjmqYK/blib/arch:/usr/local/src/CPAN/build/Benchmark-Forking-0.99-AjmqYK/blib/lib:/usr/local/src/CPAN/build/Baseball-Simulation-0.1.1-FR9o4O/blib/arch:/usr/local/src/CPAN/build/Baseball-Simulation-0.1.1-FR9o4O/blib/lib:/usr/local/src/CPAN/build/Base64-Serializer_0.1-nd9jeh/blib/arch:/usr/local/src/CPAN/build/Base64-Serializer_0.1-nd9jeh/blib/lib:/usr/local/src/CPAN/build/CGI-Session-4.35-2AHyuR/blib/arch:/usr/local/src/CPAN/build/CGI-Session-4.35-2AHyuR/blib/lib:/usr/local/src/CPAN/build/Barcode-RM4SCC-1.5-uN8FuX/blib/arch:/usr/local/src/CPAN/build/Barcode-RM4SCC-1.5-uN8FuX/blib/lib:/usr/local/src/CPAN/build/Babble-0.07-bmioig/blib/arch:/usr/local/src/CPAN/build/Babble-0.07-bmioig/blib/lib:/usr/local/src/CPAN/build/BZFlag-Info-1.9.2-QFy6hF/blib/arch:/usr/local/src/CPAN/build/BZFlag-Info-1.9.2-QFy6hF/blib/lib:/usr/local/src/CPAN/build/BSD-Jail-0.01-0KCXDy/blib/arch:/usr/local/src/CPAN/build/BSD-Jail-0.01-0KCXDy/blib/lib:/usr/local/src/CPAN/build/BFD-0.31-z69jbU/blib/arch:/usr/local/src/CPAN/build/BFD-0.31-z69jbU/blib/lib:/usr/local/src/CPAN/build/B-More-1.01-kRp8aE/blib/arch:/usr/local/src/CPAN/build/B-More-1.01-kRp8aE/blib/lib:/usr/local/src/CPAN/build/Text-WikiFormat-SAX-0.03-0p3Sra/blib/arch:/usr/local/src/CPAN/build/Text-WikiFormat-SAX-0.03-0p3Sra/blib/lib:/usr/local/src/CPAN/build/Pod-SAX-0.14-N5Rtn1/blib/arch:/usr/local/src/CPAN/build/Pod-SAX-0.14-N5Rtn1/blib/lib:/usr/local/src/CPAN/build/XML-SAX-Writer-0.50-z0ZVgS/blib/arch:/usr/local/src/CPAN/build/XML-SAX-Writer-0.50-z0ZVgS/blib/lib:/usr/local/src/CPAN/build/Text-Iconv-1.7-eXkWMJ/blib/arch:/usr/local/src/CPAN/build/Text-Iconv-1.7-eXkWMJ/blib/lib:/usr/local/src/CPAN/build/XML-Filter-BufferText-1.01-GTVGvI/blib/arch:/usr/local/src/CPAN/build/XML-Filter-BufferText-1.01-GTVGvI/blib/lib:/usr/local/src/CPAN/build/RDF-Core-0.51-I6Fm8H/blib/arch:/usr/local/src/CPAN/build/RDF-Core-0.51-I6Fm8H/blib/lib:/usr/local/src/CPAN/build/Data-Page-2.00-Hufsxq/blib/arch:/usr/local/src/CPAN/build/!
 Data-Pag
e-2.00-Hufsxq/blib/lib:/usr/local/src/CPAN/build/Class-Accessor-Chained-0.01-Kx0cTP/blib/arch:/usr/local/src/CPAN/build/Class-Accessor-Chained-0.01-Kx0cTP/blib/lib:/usr/local/src/CPAN/build/AutoSession-0.01-GRRxFs/blib/arch:/usr/local/src/CPAN/build/AutoSession-0.01-GRRxFs/blib/lib:/usr/local/src/CPAN/build/AutoCode-0.2-Dsef0u/blib/arch:/usr/local/src/CPAN/build/AutoCode-0.2-Dsef0u/blib/lib:/usr/local/src/CPAN/build/Crypt-DES_PP-1.00-B3EGhY/blib/arch:/usr/local/src/CPAN/build/Crypt-DES_PP-1.00-B3EGhY/blib/lib:/usr/local/src/CPAN/build/Authen-DigestMD5-0.04-5RY84g/blib/arch:/usr/local/src/CPAN/build/Authen-DigestMD5-0.04-5RY84g/blib/lib:/usr/local/src/CPAN/build/Auth-Krb5Afs-1.0-b8XEo3/blib/arch:/usr/local/src/CPAN/build/Auth-Krb5Afs-1.0-b8XEo3/blib/lib:/usr/local/src/CPAN/build/Crypt-RSA-1.98-BRjbjX/blib/arch:/usr/local/src/CPAN/build/Crypt-RSA-1.98-BRjbjX/blib/lib:/usr/local/src/CPAN/build/Data-Buffer-0.04-mUBPsg/blib/arch:/usr/local/src/CPAN/build/Data-Buffer-0.04-mUBPsg/blib/lib:/usr/local/src/CPAN/build/Crypt-Primes-0.50-MERbch/blib/arch:/usr/local/src/CPAN/build/Crypt-Primes-0.50-MERbch/blib/lib:/usr/local/src/CPAN/build/Sort-Versions-1.5-4jq2We/blib/arch:/usr/local/src/CPAN/build/Sort-Versions-1.5-4jq2We/blib/lib:/usr/local/src/CPAN/build/Digest-MD2-2.03-nlBIvn/blib/arch:/usr/local/src/CPAN/build/Digest-MD2-2.03-nlBIvn/blib/lib:/usr/local/src/CPAN/build/Convert-ASCII-Armour-1.4-fCn3Ym/blib/arch:/usr/local/src/CPAN/build/Convert-ASCII-Armour-1.4-fCn3Ym/blib/lib:/usr/local/src/CPAN/build/Crypt-Random-1.25-3iZ252/blib/arch:/usr/local/src/CPAN/build/Crypt-Random-1.25-3iZ252/blib/lib:/usr/local/src/CPAN/build/Class-Loader-2.03-gz6L98/blib/arch:/usr/local/src/CPAN/build/Class-Loader-2.03-gz6L98/blib/lib:/usr/local/src/CPAN/build/Math-Pari-2.010800-J5b47w/blib/arch:/usr/local/src/CPAN/build/Math-Pari-2.010800-J5b47w/blib/lib:/usr/local/src/CPAN/build/Digest-SHA1-2.11-Kjkslv/blib/arch:/usr/local/src/CPAN/build/Digest-SHA1-2.11-Kjkslv/blib/lib:/usr/local/src/CPAN/build/Tie-EncryptedHash-1.24-DqtXwU/blib/arc!
 h:/usr/l
ocal/src/CPAN/build/Tie-EncryptedHash-1.24-DqtXwU/blib/lib:/usr/local/src/CPAN/build/Crypt-CBC-2.29-JFmOzQ/blib/arch:/usr/local/src/CPAN/build/Crypt-CBC-2.29-JFmOzQ/blib/lib:/usr/local/src/CPAN/build/Crypt-DES-2.05-N8ddLE/blib/arch:/usr/local/src/CPAN/build/Crypt-DES-2.05-N8ddLE/blib/lib:/usr/local/src/CPAN/build/Locale-Framework-0.06-fP8QJJ/blib/arch:/usr/local/src/CPAN/build/Locale-Framework-0.06-fP8QJJ/blib/lib:/usr/local/src/CPAN/build/Config-Backend-INI-0.12-IOPn9m/blib/arch:/usr/local/src/CPAN/build/Config-Backend-INI-0.12-IOPn9m/blib/lib:/usr/local/src/CPAN/build/Config-IniFiles-2.38-kRQ_e9/blib/arch:/usr/local/src/CPAN/build/Config-IniFiles-2.38-kRQ_e9/blib/lib:/usr/local/src/CPAN/build/Config-Frontend-0.18-C3psBq/blib/arch:/usr/local/src/CPAN/build/Config-Frontend-0.18-C3psBq/blib/lib:/usr/local/src/CPAN/build/Crypt-Blowfish-2.10-QLASVc/blib/arch:/usr/local/src/CPAN/build/Crypt-Blowfish-2.10-QLASVc/blib/lib:/usr/local/src/CPAN/build/Audio-Radio-V4L-0.01-PCYVDf/blib/arch:/usr/local/src/CPAN/build/Audio-Radio-V4L-0.01-PCYVDf/blib/lib:/usr/local/src/CPAN/build/Audio-Mixer-0.7-CGsBwQ/blib/arch:/usr/local/src/CPAN/build/Audio-Mixer-0.7-CGsBwQ/blib/lib:/usr/local/src/CPAN/build/Audio-Mad-0.6-VquN78/blib/arch:/usr/local/src/CPAN/build/Audio-Mad-0.6-VquN78/blib/lib:/usr/local/src/CPAN/build/Audio-FLAC-Decoder-0.2-o7a3RS/blib/arch:/usr/local/src/CPAN/build/Audio-FLAC-Decoder-0.2-o7a3RS/blib/lib:/usr/local/src/CPAN/build/Audio-DSS-0.02-87BYZU/blib/arch:/usr/local/src/CPAN/build/Audio-DSS-0.02-87BYZU/blib/lib:/usr/local/src/CPAN/build/Audio-Ao-0.01-Nsy0NP/blib/arch:/usr/local/src/CPAN/build/Audio-Ao-0.01-Nsy0NP/blib/lib:/usr/local/src/CPAN/build/Audio-AMaMP-0.3-JFSZTa/blib/arch:/usr/local/src/CPAN/build/Audio-AMaMP-0.3-JFSZTa/blib/lib:/usr/local/src/CPAN/build/Audio-1.029-iCtUaB/blib/arch:/usr/local/src/CPAN/build/Audio-1.029-iCtUaB/blib/lib
    PERL5OPT = -I/tmp/CPAN-Reporter-lib-lNUj -MDevel::Autoflush
    PERL5_CPANPLUS_IS_RUNNING = 51930
    PERL5_CPAN_IS_RUNNING = 51930
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 33986,51930
    PERL_CPAN_REPORTER_CONFIG = /home/cpansand/.cpanreporter/configfile.ini
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_HTML_DISPLAY_CLASS = HTML::Display::Mozilla
    SHELL = /usr/local/bin/zsh
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /usr/local/bin/perl5.10.0
    $UID/$EUID = 1023 / 1023
    $GID = 1023 1023 1023
    $EGID = 1023 1023 1023

Perl module toolchain versions installed:

    Module              Have     
    ------------------- ---------
    CPAN                1.92_62  
    Cwd                 3.2701   
    ExtUtils::CBuilder  0.23     
    ExtUtils::Command   1.14     
    ExtUtils::Install   1.50     
    ExtUtils::MakeMaker 6.44     
    ExtUtils::Manifest  1.51_01  
    ExtUtils::ParseXS   2.19     
    File::Spec          3.2701   
    Module::Build       0.2808_01
    Module::Signature   n/a      
    Test::Harness       3.10     
    Test::More          0.80     
    YAML                0.66     
    YAML::Syck          1.04     
    version             0.74     


--

Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
  Platform:
    osname=freebsd, osvers=6.1-release, archname=i386-freebsd
    uname='freebsd biokovo.herceg.de 6.1-release freebsd 6.1-release #0: sun may 7 04:32:43 utc 2006 root@opus.cse.buffalo.edu:usrobjusrsrcsysgeneric i386 '
    config_args='-Dprefix=/usr/perl5.10.0 -Dusemymalloc=n -D cc=ccache cc -Dgccansipedantic -Duse64bit -de -D hintfile=myfreebsd'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=undef, use64bitall=undef, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='ccache cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -I/usr/local/include',
    optimize='-O2 -mtune=athlon64 -pipe',
    cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -I/usr/local/include'
    ccversion='', gccversion='3.4.4 [FreeBSD] 20050518', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='ccache cc', ldflags ='-Wl,-E  -L/usr/local/lib'
    libpth=/usr/lib /usr/local/lib
    libs=-lm -lcrypt -lutil -lc
    perllibs=-lm -lcrypt -lutil -lc
    libc=, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
    cccdlflags='-DPIC -fPIC', lddlflags='-shared  -L/usr/local/lib'

• PASS Bio-SAGE-Comparison-1.00 i386-freebsd 6.1-release by srezic